June 2011

Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis

L Aravind, Robson F de Souza, and Lakshminarayan M Iyer

Biol Direct. 2010; 5: 48. Published online 2010 August 2. doi: 10.1186/1745-6150-5-48

PMCID:: PMC2922099

Abstract Full Text PDF–3.7M Supplementary Material

From the Cover: Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis

Marko Mocibob, Nives Ivic, Silvija Bilokapic, Timm Maier, Marija Luic, Nenad Ban, and Ivana Weygand-Durasevic

Proc Natl Acad Sci U S A. 2010 August 17; 107(33): 14585–14590. Published online 2010 July 27.doi: 10.1073/pnas.1007470107

PMCID:: PMC2930448

Abstract Full Text PDF–1.8M Supplementary Material

A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells

Raffaella Calligaris, Cristina Bellarosa, Rossana Foti, Paola Roncaglia, Pablo Giraudi, Helena Krmac, Claudio Tiribelli, and Stefano Gustincich

BMC Genomics. 2009; 10: 543. Published online 2009 November 19. doi: 10.1186/1471-2164-10-543

PMCID:: PMC2789749

Abstract Full Text PDF–1.4M Supplementary Material

Destabilization of the P Site Codon-Anticodon Helix Results from Movement of tRNA into the P/E Hybrid State within the Ribosome

Kevin G. McGarry, Sarah E. Walker, Huanyu Wang, and Kurt Fredrick

Mol Cell. Author manuscript; available in PMC 2009 January 27.

Published in final edited form as: Mol Cell. 2005 November 23; 20(4): 613–622. doi: 10.1016/j.molcel.2005.10.007

PMCID:: PMC2631382

Abstract Full Text PDF–2.3M

U-box-type ubiquitin E4 ligase, UFD2a attenuates cisplatin mediated degradation of ΔNp63α

Aditi Chatterjee, Sunil Upadhyay, Xiaofei Chang, Jatin K. Nagpal, Barry Trink, and David Sidransky

Cell Cycle. Author manuscript; available in PMC 2011 April 11.

Published in final edited form as: Cell Cycle. 2008 May 1; 7(9): 1231–1237. Published online 2008 February 19.

PMCID:: PMC3073353

Abstract Full Text PDF–775K

The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Harold S Bernhardt and Warren P Tate

Biol Direct. 2010; 5: 16. Published online 2010 April 9. doi: 10.1186/1745-6150-5-16

PMCID:: PMC2859854

Abstract Full Text PDF–1.6M

Dependence of Phospholipase D1 Multi-monoubiquitination on Its Enzymatic Activity and Palmitoylation

Hao Yin, Yu Gui, Guangwei Du, Michael A. Frohman, and Xi-Long Zheng

J Biol Chem. 2010 April 30; 285(18): 13580–13588. Published online 2010 February 26. doi: 10.1074/jbc.M109.046359

PMCID:: PMC2859519

Abstract Full Text

The Role of Polyamines in Supporting Growth of Mammalian Cells Is Mediated through Their Requirement for Translation Initiation and Elongation

Guy Landau, Zippi Bercovich, Myung Hee Park, and Chaim Kahana

J Biol Chem. 2010 April 23; 285(17): 12474–12481. Published online 2010 February 24. doi: 10.1074/jbc.M110.106419

PMCID:: PMC2857121

Abstract Full Text Supplementary Material

Analogs of the CLV3 Peptide: Synthesis and Structure–Activity Relationships Focused on Proline Residues

Tatsuhiko Kondo, Kenjiro Yokomine, Aya Nakagawa, and Youji Sakagami

Plant Cell Physiol. 2011 January; 52(1): 30–36. Published online 2010 October 5. doi: 10.1093/pcp/pcq146

PMCID:: PMC3023850

Abstract Full Text PDF–424K

10.

Innate Immune and Chemically Triggered Oxidative Stress Modifies Translational Fidelity

Nir Netzer, Jeffrey M. Goodenbour, Alexandre David, Kimberly A. Dittmar, Richard B. Jones, Jeffrey R. Schneider, David Boone, Eva M. Eves, Marsha R. Rosner, James S. Gibbs, Alan Embry, Brian Dolan, Suman Das, Heather Hickman, Peter Berglund, Jack R. Bennink, Jonathan W. Yewdell, and Tao Pan

Nature. Author manuscript; available in PMC 2010 May 26.

Published in final edited form as: Nature. 2009 November 26; 462(7272): 522–526. doi: 10.1038/nature08576

PMCID:: PMC2785853

Abstract Full Text PDF–3.6M Supplementary Material

11.

The CCA anticodon specifies separate functions inside and outside translation in Bacillus cereus

Sandro F. Ataide, Theresa E. Rogers, and Michael Ibba

RNA Biol. Author manuscript; available in PMC 2009 November 26.

Published in final edited form as: RNA Biol. 2009 Sep–Oct; 6(4): 479–487. Published online 2009 September 23.

PMCID:: PMC2784187

Abstract Full Text PDF–1.0M

12.

High levels of tRNA abundance and alteration of tRNA charging by bortezomib in multiple myeloma

Ying Zhou, Jeffrey M. Goodenbour, Lucy A. Godley, Amittha Wickrema, and Tao Pan

Biochem Biophys Res Commun. Author manuscript; available in PMC 2010 July 24.

Published in final edited form as: Biochem Biophys Res Commun. 2009 July 24; 385(2): 160–164. Published online 2009 May 19. doi: 10.1016/j.bbrc.2009.05.031

PMCID:: PMC2774282

Abstract Full Text PDF–708K

13.

Control of translation initiation: a model-based analysis from limited experimental data

Richard J Dimelow and Stephen J Wilkinson

J R Soc Interface. 2009 January 6; 6(30): 51–61. Published online 2008 June 20. doi: 10.1098/rsif.2008.0221

PMCID:: PMC2610325

Abstract Full Text PDF–222K

14.

Label-Free Optical Detection of Peptide Synthesis on a Porous Silicon Scaffold/Sensor

Patrick Furbert, Caiyan Lu, Nicholas Winograd, and Lisa DeLouise

Langmuir. Author manuscript; available in PMC 2008 October 27.

Published in final edited form as: Langmuir. 2008 March 18; 24(6): 2908–2915. Published online 2008 February 5.doi: 10.1021/la703053h

PMCID:: PMC2573388

Abstract Full Text PDF–782K Supplementary Material

15.

Cytophobic surface modification of microfluidic arrays for in situ parallel peptide synthesis and cell adhesion assays

Suparna Mandal, Jean Marie Rouillard, Onnop Srivannavit, and Erdogan Gulari

Biotechnol Prog. Author manuscript; available in PMC 2008 September 21.

Published in final edited form as: Biotechnol Prog. 2007; 23(4): 972–978. Published online 2007 July 3.doi: 10.1021/bp070070a

PMCID:: PMC2546499

Abstract Full Text PDF–1.5M

16.

Prolyl Aminopeptidase from Streptomyces thermoluteus subsp. fuscus Strain NBRC14270 and Synthesis of Proline-Containing Peptides by Its S144C Variant

Yukihiro Yamamoto, Hirokazu Usuki, Masaki Iwabuchi, and Tadashi Hatanaka

Appl Environ Microbiol. 2010 September; 76(18): 6180–6185. Published online 2010 July 30. doi: 10.1128/AEM.01242-10

PMCID:: PMC2937496

Abstract Full Text PDF–585K Supplementary Material

17.

TRC8, A KIDNEY CANCER-ASSOCIATED UBIQUITIN LIGASE, IS STEROL-REGULATED AND INTERACTS WITH LIPID AND PROTEIN BIOSYNTHETIC PATHWAYS

Jason P. Lee, Anne Brauweiler, Michael Rudolph, Joan E. Hooper, Harry A. Drabkin, and Robert M. Gemmill

Mol Cancer Res. Author manuscript; available in PMC 2011 May 3.

Published in final edited form as: Mol Cancer Res. 2010 January; 8(1): 93–106. Published online 2010 January 12.doi: 10.1158/1541-7786.MCR-08-0491

PMCID:: PMC3086825

Abstract Full Text PDF–3.1M Supplementary Material

18.

‘Umpolung’ Reactivity in Semiaqueous Amide and Peptide Synthesis

Bo Shen, Dawn M. Makley, and Jeffrey N. Johnston

Nature. Author manuscript; available in PMC 2010 December 1.

Published in final edited form as: Nature. 2010 June 24; 465(7301): 1027–1032. doi: 10.1038/nature09125

PMCID:: PMC2945247

Abstract Full Text PDF–921K Supplementary Material

19.

Multiple Mechanisms Contribute to Inhibit Transcription in Response to DNA Damage

George F. Heine, Andrew A. Horwitz, and Jeffrey D. Parvin

J Biol Chem. 2008 April 11; 283(15): 9555–9561. doi: 10.1074/jbc.M707700200

PMCID:: PMC2442283

Abstract Full Text

20.

DNA Damage-induced Ubiquitylation of RFC2 Subunit of Replication Factor C Complex

Junya Tomida, Yuji Masuda, Hidekazu Hiroaki, Tomoko Ishikawa, Ihnyoung Song, Toshiki Tsurimoto, Satoshi Tateishi, Tadahiro Shiomi, Yasuhiro Kamei, Jinhyeong Kim, Kenji Kamiya, Cyrus Vaziri, Haruo Ohmori, and Takeshi Todo

J Biol Chem. 2008 April 4; 283(14): 9071–9079. doi: 10.1074/jbc.M709835200

PMCID:: PMC2431014

Abstract Full Text Supplementary Material

21.

Histone H2A Monoubiquitination Represses Transcription by Inhibiting RNA Polymerase II Transcriptional Elongation

Wenlai Zhou, Ping Zhu, Jianxun Wang, Gabriel Pascual, Kenneth A. Ohgi, Jean Lozach, Christopher K. Glass, and Michael G. Rosenfeld

Mol Cell. Author manuscript; available in PMC 2008 April 22.

Published in final edited form as: Mol Cell. 2008 January 18; 29(1): 69–80. doi: 10.1016/j.molcel.2007.11.002

PMCID:: PMC2327256

Abstract Full Text PDF–1.2M Supplementary Material

22.

How ubiquitination and autophagy participate in the regulation of the cell response to bacterial infection

Nicolas Dupont, Nassima Temime-Smaali, and Frank Lafont

Biol Cell. 2010 December 1; 102(Pt 12): 621–634. Published online 2010 November 1. doi: 10.1042/BC20100101

PMCID:: PMC2975374

Abstract Full Text Supplementary Material

23.

De Novo Evolution of Complex, Global and Hierarchical Gene Regulatory Mechanisms

Dafyd J. Jenkins and Dov J. Stekel

J Mol Evol. 2010 August; 71(2): 128–140. Published online 2010 August 3. doi: 10.1007/s00239-010-9369-4

PMCID:: PMC2924499

Abstract Full Text PDF–609K Supplementary Material

24.

Clusterin facilitates COMMD1 and I-κB degradation to enhance NF-κB activity in prostate cancer cells

Amina Zoubeidi, Susan Ettinger, Eliana Beraldi, Boris Hadaschik, Anousheh Zardan, Leo WJ Klomp, Colleen C. Nelson, Paul S. Rennie, and Martin E. Gleave

Mol Cancer Res. Author manuscript; available in PMC 2011 January 12.

Published in final edited form as: Mol Cancer Res. 2010 January; 8(1): 119–130. Published online 2010 January 12.doi: 10.1158/1541-7786.MCR-09-0277

PMCID:: PMC2808437

Abstract Full Text PDF–2.8M Supplementary Material

25.

Splicing of the Mycobacteriophage Bethlehem DnaB Intein: IDENTIFICATION OF A NEW MECHANISTIC CLASS OF INTEINS THAT CONTAIN AN OBLIGATE BLOCK F NUCLEOPHILE

Kazuo Tori, Bareket Dassa, Margaret A. Johnson, Maurice W. Southworth, Lear E. Brace, Yoshizumi Ishino, Shmuel Pietrokovski, and Francine B. Perler

J Biol Chem. 2010 January 22; 285(4): 2515–2526. Published online 2009 November 22. doi: 10.1074/jbc.M109.069567

PMCID:: PMC2807308

Abstract Full Text Supplementary Material

26.

Post-translational Regulation of Runx2 in Bone and Cartilage

J.H. Jonason, G. Xiao, M. Zhang, L. Xing, and D. Chen

J Dent Res. Author manuscript; available in PMC 2010 June 10.

Published in final edited form as: J Dent Res. 2009 August; 88(8): 693–703. doi: 10.1177/0022034509341629

PMCID:: PMC2883617

Abstract Full Text PDF–667K

27.

ER stress induces alternative nonproteasomal degradation of ER proteins but not of cytosolic ones

Marina Shenkman, Sandra Tolchinsky, and Gerardo Z. Lederkremer

Cell Stress Chaperones. 2007 December; 12(4): 373–383. doi: 10.1379/CSC-281.1

PMCID:: PMC2134799

Abstract Full Text PDF–845K

28.

Pyrrolysine is not hardwired for cotranslational insertion at UAG codons

Alexandre Ambrogelly, Sarath Gundllapalli, Stephanie Herring, Carla Polycarpo, Carina Frauer, and Dieter Söll

Proc Natl Acad Sci U S A. 2007 February 27; 104(9): 3141–3146. Published online 2007 February 20.doi: 10.1073/pnas.0611634104

PMCID:: PMC1805618

Abstract Full Text PDF–562K

29.

Have tRNA, will travel

Eric M. Phizicky

Proc Natl Acad Sci U S A. 2005 August 9; 102(32): 11127–11128. Published online 2005 August 1.doi: 10.1073/pnas.0504843102

PMCID:: PMC1183579

Full Text PDF–107K

30.

Control of Glutamate Receptor 2 (GluR2) Translational Initiation by Its Alternative 3′ Untranslated Regions

Hasan A. Irier, Yi Quan, Justin Yoo, and Raymond Dingledine

Mol Pharmacol. 2009 December; 76(6): 1145–1149. doi: 10.1124/mol.109.060343

PMCID:: PMC2784723

Abstract Full Text PDF–411K Supplementary Material

31.

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

Yvan Zivanovic, Jean Armengaud, Arnaud Lagorce, Christophe Leplat, Philippe Guérin, Murielle Dutertre, Véronique Anthouard, Patrick Forterre, Patrick Wincker, and Fabrice Confalonieri

Genome Biol. 2009; 10(6): R70. Published online 2009 June 26. doi: 10.1186/gb-2009-10-6-r70

PMCID:: PMC2718504

Abstract Full Text PDF–1.2M Supplementary Material

32.

COP9 Signalosome- and 26S Proteasome-dependent Regulation of SCF^TIR1 Accumulation in Arabidopsis

Johannes Stuttmann, Esther Lechner, Raphael Guérois, Jane E. Parker, Laurent Nussaume, Pascal Genschik, and Laurent D. Noël

J Biol Chem. 2009 March 20; 284(12): 7920–7930. doi: 10.1074/jbc.M809069200

PMCID:: PMC2658085

Abstract Full Text Supplementary Material

33.

Hormone signaling through protein destruction: a lesson from plants

Xu Tan and Ning Zheng

Am J Physiol Endocrinol Metab. 2009 February; 296(2): E223–E227. Published online 2008 December 2.doi: 10.1152/ajpendo.90807.2008

PMCID:: PMC2645024

Abstract Full Text

34.

In vivo incorporation of multiple unnatural amino acids through nonsense and frameshift suppression

Erik A. Rodriguez, Henry A. Lester, and Dennis A. Dougherty

Proc Natl Acad Sci U S A. 2006 June 6; 103(23): 8650–8655. Published online 2006 May 25.doi: 10.1073/pnas.0510817103

PMCID:: PMC1482635

Abstract Full Text PDF–536K Supplementary Material

35.

Ribosome Kinetics and aa-tRNA Competition Determine Rate and Fidelity of Peptide Synthesis

Aaron Fluitt, Elsje Pienaar, and Hendrik Viljoen

Comput Biol Chem. Author manuscript; available in PMC 2009 August 17.

Published in final edited form as: Comput Biol Chem. 2007 October; 31(5-6): 335–346. Published online 2007 August 15.doi: 10.1016/j.compbiolchem.2007.07.003

PMCID:: PMC2727733

Abstract Full Text PDF–1.7M

36.

Epstein-Barr Virus Nuclear Antigen 3C Facilitates G1-S Transition by Stabilizing and Enhancing the Function of Cyclin D1

Abhik Saha, Sabyasachi Halder, Santosh K. Upadhyay, Jie Lu, Pankaj Kumar, Masanao Murakami, Qiliang Cai, and Erle S. Robertson

PLoS Pathog. 2011 February; 7(2): e1001275. Published online 2011 February 10. doi: 10.1371/journal.ppat.1001275

PMCID:: PMC3037348

Abstract Full Text PDF–4.6M

37.

A ‘gain of function' mutation in a protein mediates production of novel modified nucleosides

Peng Chen, Pamela F Crain, S Joakim Näsvall, Steven C Pomerantz, and Glenn R Björk

EMBO J. 2005 May 18; 24(10): 1842–1851. Published online 2005 April 28. doi: 10.1038/sj.emboj.7600666

PMCID:: PMC1142597

Abstract Full Text PDF–241K Supplementary Material

38.

Dendritic BC1 RNA: Functional Role in Regulation of Translation Initiation

Huidong Wang, Anna Iacoangeli, Susanna Popp, Ilham A. Muslimov, Hiroaki Imataka, Nahum Sonenberg, Ivan B. Lomakin, and Henri Tiedge

J Neurosci. Author manuscript; available in PMC 2007 March 19.

Published in final edited form as: J Neurosci. 2002 December 1; 22(23): 10232–10241.

PMCID:: PMC1828542

Abstract Full Text PDF–653K

39.

Role of a ribosome-associated E3 ubiquitin ligase in protein quality control

Mario H. Bengtson and Claudio A.P. Joazeiro

Nature. Author manuscript; available in PMC 2011 March 23.

Published in final edited form as: Nature. 2010 September 23; 467(7314): 470–473. Published online 2010 September 12.doi: 10.1038/nature09371

PMCID:: PMC2988496

Abstract Full Text PDF–1.2M Supplementary Material

40.

Halophiles 2010: Life in Saline Environments

Yanhe Ma, Erwin A. Galinski, William D. Grant, Aharon Oren, and Antonio Ventosa

Appl Environ Microbiol. 2010 November; 76(21): 6971–6981. Published online 2010 September 3.doi: 10.1128/AEM.01868-10

PMCID:: PMC2976238

Full Text PDF–326K

41.

The Laforin–Malin Complex, Involved in Lafora Disease, Promotes the Incorporation of K63-linked Ubiquitin Chains into AMP-activated Protein Kinase β Subunits

Daniel Moreno, Mhairi C. Towler, D. Grahame Hardie, Erwin Knecht, and Pascual Sanz

Mol Biol Cell. 2010 August 1; 21(15): 2578–2588. doi: 10.1091/mbc.E10-03-0227

PMCID:: PMC2912345

Abstract Full Text PDF–2.6M Supplementary Material

42.

The Scaffold Protein TANK/I-TRAF Inhibits NF-κB Activation by Recruiting Polo-like Kinase 1

Wanqiao Zhang, Jian Wang, Ying Zhang, Yanzhi Yuan, Wei Guan, Chaozhi Jin, Hui Chen, Xiaohui Wang, Xiaoming Yang, and Fuchu He

Mol Biol Cell. 2010 July 15; 21(14): 2500–2513. doi: 10.1091/mbc.E09-08-0715

PMCID:: PMC2903677

Abstract Full Text PDF–2.6M

43.

Scyl1 Facilitates Nuclear tRNA Export in Mammalian Cells by Acting at the Nuclear Pore Complex

Shawn C. Chafe and Dev Mangroo

Mol Biol Cell. 2010 July 15; 21(14): 2483–2499. doi: 10.1091/mbc.E10-03-0176

PMCID:: PMC2903676

Abstract Full Text PDF–2.1M Supplementary Material

44.

A novel statin-mediated “prenylation block-and-release” assay provides insight into the membrane targeting mechanisms of small GTPases

Bassam R. Ali, Ian Nouvel, Ka Fai Leung, Alistair N. Hume, and Miguel C. Seabra

Biochem Biophys Res Commun. 2010 June 18; 397(1): 34–41. doi: 10.1016/j.bbrc.2010.05.045

PMCID:: PMC2908739

Abstract Full Text PDF–1.2M Supplementary Material

45.

Multiple mechanisms collectively regulate clathrin-mediated endocytosis of the epidermal growth factor receptor

Lai Kuan Goh, Fangtian Huang, Woong Kim, Steven Gygi, and Alexander Sorkin

J Cell Biol. 2010 May 31; 189(5): 871–883. doi: 10.1083/jcb.201001008

PMCID:: PMC2878939

Abstract Full Text PDF–5.0M Supplementary Material

46.

Inhibition of Hypoxia-Inducible Factor-1α (HIF-1α) Protein Synthesis by DNA Damage Inducing Agents

Jessica Jie Wei Lou, Yee Liu Chua, Eng Hui Chew, Jie Gao, Martin Bushell, and Thilo Hagen

PLoS One. 2010; 5(5): e10522. Published online 2010 May 7. doi: 10.1371/journal.pone.0010522

PMCID:: PMC2866540

Abstract Full Text PDF–1.3M Supplementary Material

47.

Cooperation between Translating Ribosomes and RNA Polymerase in Transcription Elongation

Sergei Proshkin, Rachid Rahmouni, Alexander Mironov, and Evgeny Nudler

Science. Author manuscript; available in PMC 2010 August 31.

Published in final edited form as: Science. 2010 April 23; 328(5977): 504–508. doi: 10.1126/science.1184939

PMCID:: PMC2930199

Abstract Full Text PDF–790K Supplementary Material

48.

Ubiquitin-Independent Degradation of Antiapoptotic MCL-1

Daniel P. Stewart, Brian Koss, Madhavi Bathina, Rhonda M. Perciavalle, Kristen Bisanz, and Joseph T. Opferman

Mol Cell Biol. 2010 June; 30(12): 3099–3110. Published online 2010 April 12. doi: 10.1128/MCB.01266-09

PMCID:: PMC2876674

Abstract Full Text PDF–1.4M

49.

AtBAG7, an Arabidopsis Bcl-2–associated athanogene, resides in the endoplasmic reticulum and is involved in the unfolded protein response

Brett Williams, Mehdi Kabbage, Robert Britt, and Martin B. Dickman

Proc Natl Acad Sci U S A. 2010 March 30; 107(13): 6088–6093. Published online 2010 March 15.doi: 10.1073/pnas.0912670107

PMCID:: PMC2851922

Abstract Full Text PDF–527K Supplementary Material

50.

Molecular Architecture of the Human Prp19/CDC5L Complex

Michael Grote, Elmar Wolf, Cindy L. Will, Ira Lemm, Dmitry E. Agafonov, Adrian Schomburg, Wolfgang Fischle, Henning Urlaub, and Reinhard Lührmann

Mol Cell Biol. 2010 May; 30(9): 2105–2119. Published online 2010 February 22. doi: 10.1128/MCB.01505-09

PMCID:: PMC2863591

Abstract Full Text PDF–3.9M Supplementary Material

51.

Antineoplastic effects of an Aurora B kinase inhibitor in breast cancer

Christopher P Gully, Fanmao Zhang, Jian Chen, James A Yeung, Guermarie Velazquez-Torres, Edward Wang, Sai-Ching Jim Yeung, and Mong-Hong Lee

Mol Cancer. 2010; 9: 42. Published online 2010 February 22. doi: 10.1186/1476-4598-9-42

PMCID:: PMC2839967

Abstract Full Text PDF–2.1M

52.

Myristoylated Naked2 Antagonizes Wnt-β-Catenin Activity by Degrading Dishevelled-1 at the Plasma Membrane

Tianhui Hu, Cunxi Li, Zheng Cao, Terence J. Van Raay, Jason G. Smith, Karl Willert, Lila Solnica-Krezel, and Robert J. Coffey

J Biol Chem. 2010 April 30; 285(18): 13561–13568. Published online 2010 February 20. doi: 10.1074/jbc.M109.075945

PMCID:: PMC2859517

Abstract Full Text

53.

Differential Inhibition of Protein Translation Machinery by Curcumin in Normal, Immortalized and Malignant Oral Epithelial Cells

Nitin Chakravarti, Humam Kadara, Do-Jun Yoon, Jerry W Shay, Jeffrey N Myers, Dafna Lotan, Nahum Sonenberg, and Reuben Lotan

Cancer Prev Res (Phila) Author manuscript; available in PMC 2011 March 1.

Published in final edited form as: Cancer Prev Res (Phila). 2010 March; 3(3): 331–338. Published online 2010 February 9.doi: 10.1158/1940-6207.CAPR-09-0076

PMCID:: PMC2833226

Abstract Full Text PDF–2.0M

54.

HECT E3 Ubiquitin Ligase Nedd4-1 Ubiquitinates ACK and Regulates Epidermal Growth Factor (EGF)-Induced Degradation of EGF Receptor and ACK

Qiong Lin, Jian Wang, Chandra Childress, Marius Sudol, David J. Carey, and Wannian Yang

Mol Cell Biol. 2010 March; 30(6): 1541–1554. Published online 2010 January 19. doi: 10.1128/MCB.00013-10

PMCID:: PMC2832494

Abstract Full Text PDF–2.6M

55.

The ubiquitin-activating enzyme E1 as a therapeutic target for the treatment of leukemia and multiple myeloma

G. Wei Xu, Mohsin Ali, Tabitha E. Wood, Derek Wong, Neil Maclean, Xiaoming Wang, Marcela Gronda, Marko Skrtic, Xiaoming Li, Rose Hurren, Xinliang Mao, Meenakshi Venkatesan, Reza Beheshti Zavareh, Troy Ketela, John C. Reed, David Rose, Jason Moffat, Robert A. Batey, Sirano Dhe-Paganon, and Aaron D. Schimmer

Blood. 2010 March 18; 115(11): 2251–2259. Prepublished online 2010 January 14. doi: 10.1182/blood-2009-07-231191

PMCID:: PMC2920204

Abstract Full Text Supplementary Material

56.

Oxidative stress–specific interaction between FANCD2 and FOXO3a

Jie Li, Wei Du, Suzette Maynard, Paul R. Andreassen, and Qishen Pang

Blood. 2010 February 25; 115(8): 1545–1548. Prepublished online 2009 December 29. doi: 10.1182/blood-2009-07-234385

PMCID:: PMC2830760

Abstract Full Text

57.

Inducible Priming Phosphorylation Promotes Ligand-independent Degradation of the IFNAR1 Chain of Type I Interferon Receptor

Sabyasachi Bhattacharya, Wei-Chun HuangFu, Jianghuai Liu, Sudhakar Veeranki, Darren P. Baker, Constantinos Koumenis, J. Alan Diehl, and Serge Y. Fuchs

J Biol Chem. 2010 January 22; 285(4): 2318–2325. Published online 2009 November 30. doi: 10.1074/jbc.M109.071498

PMCID:: PMC2807289

Abstract Full Text

58.

BBAP Monoubiquitylates Histone H4 at Lysine 91 and Selectively Modulates the DNA Damage Response

Qingsheng Yan, Shilpee Dutt, Rong Xu, Katherine Graves, Przemyslaw Juszczynski, John P. Manis, and Margaret A. Shipp

Mol Cell. Author manuscript; available in PMC 2010 October 9.

Published in final edited form as: Mol Cell. 2009 October 9; 36(1): 110–120. doi: 10.1016/j.molcel.2009.08.019

PMCID:: PMC2913878

Abstract Full Text PDF–2.5M Supplementary Material

59.

Functional Stability of Rescued ΔF508 Cystic Fibrosis Transmembrane Conductance Regulator in Airway Epithelial Cells

Asta Jurkuvenaite, Lan Chen, Rafal Bartoszewski, Rebecca Goldstein, Zsuzsa Bebok, Sadis Matalon, and James F. Collawn

Am J Respir Cell Mol Biol. 2010 March; 42(3): 363–372. Published online 2009 June 5. doi: 10.1165/rcmb.2008-0434OC

PMCID:: PMC2830406

Abstract Full Text PDF–826K

60.

An unexpected type of ribosomes induced by kasugamycin: A look into ancestral times of protein synthesis?

Anna Chao Kaberdina, Witold Szaflarski, Knud H. Nierhaus, and Isabella Moll

Mol Cell. Author manuscript; available in PMC 2010 November 2.

Published in final edited form as: Mol Cell. 2009 January 30; 33(2): 227–236. doi: 10.1016/j.molcel.2008.12.014

PMCID:: PMC2967816

Abstract Full Text PDF–896K Supplementary Material

61.

γ-Aminobutyric Acid Inhibits Synergistic Interleukin-6 Release sbut not Transcriptional Activation in Astrocytoma Cells

Joseph D. Roach, Jr., Grant T. Aguinaldo, Kaumudi Jonnalagadda, Francis M. Hughes, Jr., and Bryan L. Spangelo

Neuroimmunomodulation. Author manuscript; available in PMC 2010 April 26.

Published in final edited form as: Neuroimmunomodulation. 2008; 15(2): 117–124. Published online 2008 August 5.doi: 10.1159/000148194

PMCID:: PMC2859952

Abstract Full Text PDF–1.5M

62.

Butyrate increases the efficiency of translation of γ-globin mRNA

Rona S. Weinberg, Xinjun Ji, Millicent Sutton, Susan Perrine, Yelena Galperin, Qiliang Li, Stephen A. Liebhaber, George Stamatoyannopoulos, and George F. Atweh

Blood. Author manuscript; available in PMC 2010 February 22.

Published in final edited form as: Blood. 2005 February 15; 105(4): 1807–1809. Published online 2004 October 12.doi: 10.1182/blood-2004-02-0454

PMCID:: PMC2826269

Abstract Full Text PDF–658K

63.

Mechanisms of c-Myc Degradation by Nickel Compounds and Hypoxia

Qin Li, Thomas Kluz, Hong Sun, and Max Costa

PLoS One. 2009; 4(12): e8531. Published online 2009 December 31. doi: 10.1371/journal.pone.0008531

PMCID:: PMC2797325

Abstract Full Text PDF–510K

64.

Expression of the VP2 Protein of Murine Norovirus by a Translation Termination-Reinitiation Strategy

Sawsan Napthine, Robert A. Lever, Michael L. Powell, Richard J. Jackson, T. David K. Brown, and Ian Brierley

PLoS One. 2009; 4(12): e8390. Published online 2009 December 22. doi: 10.1371/journal.pone.0008390

PMCID:: PMC2793014

Abstract Full Text PDF–962K

65.

IFN-β-Induced Alteration of VSV Protein Phosphorylation in Neuronal Cells

Paul M. D'agostino, Jessica J. Amenta, and Carol Shoshkes Reiss

Viral Immunol. 2009 December; 22(6): 353–369. doi: 10.1089/vim.2009.0057

PMCID:: PMC2812813

Abstract Full Text PDF–528K

66.

The E3 Ubiquitin-Ligase Bmi1/Ring1A Controls the Proteasomal Degradation of Top2α Cleavage Complex – A Potentially New Drug Target

Iris Alchanati, Carmit Teicher, Galit Cohen, Vivian Shemesh, Haim M. Barr, Philippe Nakache, Danny Ben-Avraham, Anna Idelevich, Itzchak Angel, Nurit Livnah, Shmuel Tuvia, Yuval Reiss, Daniel Taglicht, and Omri Erez

PLoS One. 2009; 4(12): e8104. Published online 2009 December 1. doi: 10.1371/journal.pone.0008104

PMCID:: PMC2779455

Abstract Full Text PDF–2.8M Supplementary Material

67.

Dual Functions of Mss51 Couple Synthesis of Cox1 to Assembly of Cytochrome c Oxidase inSaccharomyces cerevisiae Mitochondria

Xochitl Perez-Martinez, Christine A. Butler, Miguel Shingu-Vazquez, and Thomas D. Fox

Mol Biol Cell. 2009 October 15; 20(20): 4371–4380. doi: 10.1091/mbc.E09-06-0522

PMCID:: PMC2762147

Abstract Full Text PDF–1.0M

68.

Identification of a novel small molecule HIF-1α translation inhibitor

Takuhito Narita, Shaoman Yin, Christine F. Gelin, Carlos S. Moreno, Manuel Yepes, K. C. Nicolaou, and Erwin G. Van Meir

Clin Cancer Res. Author manuscript; available in PMC 2010 October 1.

Published in final edited form as: Clin Cancer Res. 2009 October 1; 15(19): 6128–6136. Published online 2009 September 29. doi: 10.1158/1078-0432.CCR-08-3180

PMCID:: PMC2770235

Abstract Full Text PDF–2.9M Supplementary Material

69.

Marie Messmer, Agnès Gaudry, Marie Sissler, and Catherine Florentz

RNA. 2009 August; 15(8): 1462–1468. doi: 10.1261/rna.1626109

PMCID:: PMC2714750

Abstract Full Text PDF–497K

70.

Oral Leucine Enhances Myocardial Protein Synthesis in Rats Acutely Administered Ethanol

ThomasC. Vary

J Nutr. 2009 August; 139(8): 1439–1444. doi: 10.3945/jn.108.098707

PMCID:: PMC2709300

Abstract Full Text PDF–500K

71.

Dislocation of HMG-CoA Reductase and Insig-1, Two Polytopic Endoplasmic Reticulum Proteins, En Route to Proteasomal Degradation

Gil S. Leichner, Rachel Avner, Dror Harats, and Joseph Roitelman

Mol Biol Cell. 2009 July 15; 20(14): 3330–3341. doi: 10.1091/mbc.E08-09-0953

PMCID:: PMC2710830

Abstract Full Text PDF–1.3M

72.

A Cds1-Mediated Checkpoint Protects the MBF Activator Rep2 from Ubiquitination by Anaphase-Promoting Complex/Cyclosome-Ste9 at S-Phase Arrest in Fission Yeast

Zhaoqing Chu, Majid Eshaghi, Suk Yean Poon, and Jianhua Liu

Mol Cell Biol. 2009 September; 29(18): 4959–4970. Published online 2009 July 13. doi: 10.1128/MCB.00562-09

PMCID:: PMC2738293

Abstract Full Text PDF–1.7M Supplementary Material

73.

Occludin Phosphorylation and Ubiquitination Regulate Tight Junction Trafficking and Vascular Endothelial Growth Factor-induced Permeability

Tomoaki Murakami, Edward A. Felinski, and David A. Antonetti

J Biol Chem. 2009 July 31; 284(31): 21036–21046. Published online 2009 May 28. doi: 10.1074/jbc.M109.016766

PMCID:: PMC2742868

Abstract Full Text Supplementary Material

74.

The role of translational regulation in ultraviolet C light-induced cyclooxygenase-2 expression

Csaba F. László, Sherine Fayad, Oliver L. Carpenter, Kimberly S. George, Wei Lu, Abir Adel Abdel-Razak Saad, and Shiyong Wu

Life Sci. Author manuscript; available in PMC 2009 July 30.

Published in final edited form as: Life Sci. 2009 July 3; 85(1-2): 70–76. Published online 2009 May 5.doi: 10.1016/j.lfs.2009.04.018

PMCID:: PMC2718691

Abstract Full Text PDF–1.5M

75.

Dual Targeting of a tRNA^Asp Requires Two Different Aspartyl-tRNA Synthetases in Trypanosoma brucei

Fabien Charrière, Patrick O'Donoghue, Sunna Helgadóttir, Laurence Maréchal-Drouard, Marina Cristodero, Elke K. Horn, Dieter Söll, and André Schneider

J Biol Chem. 2009 June 12; 284(24): 16210–16217. Published online 2009 April 22. doi: 10.1074/jbc.M109.005348

PMCID:: PMC2713517

Abstract Full Text

76.

Masking of a Nuclear Signal Motif by Monoubiquitination Leads to Mislocalization and Degradation of the Regulatory Enzyme Cytidylyltransferase

Bill B. Chen and Rama K. Mallampalli

Mol Cell Biol. 2009 June; 29(11): 3062–3075. Published online 2009 March 30. doi: 10.1128/MCB.01824-08

PMCID:: PMC2682000

Abstract Full Text PDF–3.4M Supplementary Material

77.

G Protein Mono-ubiquitination by the Rsp5 Ubiquitin Ligase

Matthew P. Torres, Michael J. Lee, Feng Ding, Carrie Purbeck, Brian Kuhlman, Nikolay V. Dokholyan, and Henrik G. Dohlman

J Biol Chem. 2009 March 27; 284(13): 8940–8950. doi: 10.1074/jbc.M809058200

PMCID:: PMC2659251

Abstract Full Text Supplementary Material

78.

One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation

Andrei S Rodin, Eörs Szathmáry, and Sergei N Rodin

Biol Direct. 2009; 4: 4. Published online 2009 January 27. doi: 10.1186/1745-6150-4-4

PMCID:: PMC2669802

Abstract Full Text PDF–627K Supplementary Material

79.

CDC14B Acts Through FZR1 (CDH1) to Prevent Meiotic Maturation of Mouse Oocytes

Karen Schindler and Richard M. Schultz

Biol Reprod. 2009 April; 80(4): 795–803. Prepublished online 2009 January 7. doi: 10.1095/biolreprod.108.074906

PMCID:: PMC2804832

Abstract Full Text PDF–2.0M Supplementary Material

80.

Unique Hexosaminidase Reduces Metabolic Survival Signal and Sensitizes Cardiac Myocytes to Hypoxia-Reoxygenation Injury

Gladys A. Ngoh, Heberty T. Facundo, Tariq Hamid, Wolfgang Dillmann, Natasha E. Zachara, and Steven P. Jones

Circ Res. Author manuscript; available in PMC 2010 January 2.

Published in final edited form as: Circ Res. 2009 January 2; 104(1): 41–49. Published online 2008 November 20.doi: 10.1161/CIRCRESAHA.108.189431

PMCID:: PMC2712829

Abstract Full Text PDF–1.9M

81.

Lysine-Independent Turnover of Cyclin G1 Can Be Stabilized by B′α Subunits of Protein Phosphatase 2A

Hongyun Li, Koji Okamoto, Melissa J. Peart, and Carol Prives

Mol Cell Biol. 2009 February; 29(3): 919–928. Published online 2008 November 3. doi: 10.1128/MCB.00907-08

PMCID:: PMC2630686

Abstract Full Text PDF–1.5M

82.

A Critical Role for CHIP in the Aggresome Pathway

Youbao Sha, Lavannya Pandit, Shenyan Zeng, and N. Tony Eissa

Mol Cell Biol. 2009 January; 29(1): 116–128. Published online 2008 October 27. doi: 10.1128/MCB.00829-08

PMCID:: PMC2612489

Abstract Full Text PDF–3.6M Supplementary Material

83.

Histone Deacetylase 2 Is Phosphorylated, Ubiquitinated, and Degraded by Cigarette Smoke

David Adenuga, Hongwei Yao, Thomas H. March, JeanClare Seagrave, and Irfan Rahman

Am J Respir Cell Mol Biol. 2009 April; 40(4): 464–473. Published online 2008 October 16. doi: 10.1165/rcmb.2008-0255OC

PMCID:: PMC2660563

Abstract Full Text PDF–1.1M

84.

Elongation Factor 2 and Fragile X Mental Retardation Protein Control the Dynamic Translation of Arc/Arg3.1 Essential for mGluR-LTD

Sungjin Park, Joo Min Park, Sangmok Kim, Jin-Ah Kim, Jason D. Shepherd, Constance L. Smith-Hicks, Shoaib Chowdhury, Walter Kaufmann, Dietmar Kuhl, Alexey G. Ryazanov, Richard L. Huganir, David J. Linden, and Paul F. Worley

Neuron. Author manuscript; available in PMC 2009 September 15.

Published in final edited form as: Neuron. 2008 July 10; 59(1): 70–83. doi: 10.1016/j.neuron.2008.05.023

PMCID:: PMC2743934

Abstract Full Text PDF–3.0M Supplementary Material

85.

Preparation of the Caspase-3/-7 substrate Ac-DEVD-pNA via Solution-Phase Peptide Synthesis

Quinn P. Peterson, David R. Goode, Diana C. West, Rachel C. Botham, and Paul J. Hergenrother

Nat Protoc. Author manuscript; available in PMC 2010 August 13.

Published in final edited form as: Nat Protoc. 2010; 5(2): 294–302. Published online 2010 January 28.doi: 10.1038/nprot.2009.223

PMCID:: PMC2921128

Abstract Full Text PDF–1.2M

86.

Promoting the Formation of an Active Synthetase/tRNA Complex by a Nonspecific tRNA-binding Domain

Chia-Pei Chang, Grace Lin, Shun-Jia Chen, Wen-Chih Chiu, Wen-Heng Chen, and Chien-Chia Wang

J Biol Chem. 2008 November 7; 283(45): 30699–30706. doi: 10.1074/jbc.M805339200

PMCID:: PMC2662155

Abstract Full Text

87.

Characterization of the termination–reinitiation strategy employed in the expression of influenza B virus BM2 protein

Michael L. Powell, Sawsan Napthine, Richard J. Jackson, Ian Brierley, and T. David K. Brown

RNA. 2008 November; 14(11): 2394–2406. doi: 10.1261/rna.1231008

PMCID:: PMC2578862

Abstract Full Text PDF–878K

88.

Heat shock and oxygen radicals stimulate ubiquitin-dependent degradation mainly of newly synthesized proteins

Balasubrahmanyam Medicherla and Alfred L. Goldberg

J Cell Biol. 2008 August 25; 182(4): 663–673. doi: 10.1083/jcb.200803022

PMCID:: PMC2518706

Abstract Full Text PDF–1.5M

89.

AIMP2/p38, the scaffold for the multi-tRNA synthetase complex, responds to genotoxic stresses via p53

Jung Min Han, Bum-Joon Park, Sang Gyu Park, Young Sun Oh, So Jung Choi, Sang Won Lee, Soon-Kyung Hwang, Seung-Hee Chang, Myung-Haing Cho, and Sunghoon Kim

Proc Natl Acad Sci U S A. 2008 August 12; 105(32): 11206–11211. Published online 2008 August 11.doi: 10.1073/pnas.0800297105

PMCID:: PMC2516205

Abstract Full Text PDF–828K Supplementary Material

90.

Aminoacyl tRNA synthetases and their connections to disease

Sang Gyu Park, Paul Schimmel, and Sunghoon Kim

Proc Natl Acad Sci U S A. 2008 August 12; 105(32): 11043–11049. Published online 2008 August 5.doi: 10.1073/pnas.0802862105

PMCID:: PMC2516211

Abstract Full Text PDF–933K

91.

The structure of the 5′-end of the protein-tyrosine phosphatase PTPRJ mRNA reveals a novel mechanism for translation attenuation

Luchezar Karagyozov, Rinesh Godfrey, Sylvia-Annette Böhmer, Astrid Petermann, Sebastian Hölters, Arne Östman, and Frank-D. Böhmer

Nucleic Acids Res. 2008 August; 36(13): 4443–4453. Published online 2008 August. doi: 10.1093/nar/gkn391

PMCID:: PMC2490741

Abstract Full Text PDF–217K Supplementary Material

92.

The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene

Yi Wen Kong, Ian G. Cannell, Cornelia H. de Moor, Kirsti Hill, Paul G. Garside, Tiffany L. Hamilton, Hedda A. Meijer, Helen C. Dobbyn, Mark Stoneley, Keith A. Spriggs, Anne E. Willis, and Martin Bushell

Proc Natl Acad Sci U S A. 2008 July 1; 105(26): 8866–8871. Published online 2008 June 25.doi: 10.1073/pnas.0800650105

PMCID:: PMC2449332

Abstract Full Text PDF–1.0M Supplementary Material

93.

Polyubiquitination of Prolactin Receptor Stimulates Its Internalization, Postinternalization Sorting, and Degradation via the Lysosomal Pathway

Bentley Varghese, Herve Barriere, Christopher J. Carbone, Anamika Banerjee, Gayathri Swaminathan, Alexander Plotnikov, Ping Xu, Junmin Peng, Vincent Goffin, Gergely L. Lukacs, and Serge Y. Fuchs

Mol Cell Biol. 2008 September; 28(17): 5275–5287. Published online 2008 June 23. doi: 10.1128/MCB.00350-08

PMCID:: PMC2519723

Abstract Full Text PDF–1.0M Supplementary Material

94.

Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5′–3′ exonucleases Rat1 and Xrn1

Irina Chernyakov, Joseph M. Whipple, Lakmal Kotelawala, Elizabeth J. Grayhack, and Eric M. Phizicky

Genes Dev. 2008 May 15; 22(10): 1369–1380. doi: 10.1101/gad.1654308

PMCID:: PMC2377191

Abstract Full Text PDF–869K

95.

Targeting the Aggresome Pathway in Hematologic Malignancies

Tiffany Simms-Waldrip, Agustin Rodriguez-Gonzalez, Tara Lin, Alan K Ikeda, Cecilia Fu, and Kathleen M. Sakamoto

Mol Genet Metab. Author manuscript; available in PMC 2009 July 1.

Published in final edited form as: Mol Genet Metab. 2008 July; 94(3): 283–286. Published online 2008 May 9.doi: 10.1016/j.ymgme.2008.03.012

PMCID:: PMC2587432

Abstract Full Text PDF–198K

96.

Selection of peptides interfering with a ribosomal frameshift in the human immunodeficiency virus type 1

Dominic Dulude, Gabriel Théberge-Julien, Léa Brakier-Gingras, and Nikolaus Heveker

RNA. 2008 May; 14(5): 981–991. doi: 10.1261/rna.887008

PMCID:: PMC2327360

Abstract Full Text PDF–548K

97.

Mitogen-activated Protein Kinase ERK1/2 Regulates the Class II Transactivator

Lilien N. Voong, Allison R. Slater, Sebila Kratovac, and Drew E. Cressman

J Biol Chem. 2008 April 4; 283(14): 9031–9039. doi: 10.1074/jbc.M706487200

PMCID:: PMC2431044

Abstract Full Text

98.

Hedgehog signaling overrides p53-mediated tumor suppression by activating Mdm2

Yoshinori Abe, Eri Oda-Sato, Kei Tobiume, Keiko Kawauchi, Yoichi Taya, Koji Okamoto, Moshe Oren, and Nobuyuki Tanaka

Proc Natl Acad Sci U S A. 2008 March 25; 105(12): 4838–4843. Published online 2008 March 21.doi: 10.1073/pnas.0712216105

PMCID:: PMC2290789

Abstract Full Text PDF–551K Supplementary Material

99.

Dissection of mechanisms of Chinese medicinal formula Realgar-Indigo naturalis as an effective treatment for promyelocytic leukemia

Lan Wang, Guang-Biao Zhou, Ping Liu, Jun-Hong Song, Yang Liang, Xiao-Jing Yan, Fang Xu, Bing-Shun Wang, Jian-Hua Mao, Zhi-Xiang Shen, Sai-Juan Chen, and Zhu Chen

Proc Natl Acad Sci U S A. 2008 March 25; 105(12): 4826–4831. Published online 2008 March 14.doi: 10.1073/pnas.0712365105

PMCID:: PMC2290784

Abstract Full Text PDF–1.0M Supplementary Material

100.

Pentamidine binds to tRNA through non-specific hydrophobic interactions and inhibits aminoacylation and translation

Tao Sun and Yi Zhang

Nucleic Acids Res. 2008 March; 36(5): 1654–1664. Published online 2008 March. doi: 10.1093/nar/gkm1180

PMCID:: PMC2275129

Abstract Full Text PDF–533K Supplementary Material

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